PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g012490.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 532aa MW: 59518.8 Da PI: 6.4581 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00041 | 466 | 488 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F++ L H r+H Sopim05g012490.0.1 466 HECPFCDRVFKSGQALGGHKRSH 488 78******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.12 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.7E-7 | 93 | 116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.11E-8 | 93 | 114 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.09E-5 | 386 | 418 | No hit | No description |
PROSITE profile | PS50157 | 9.515 | 390 | 417 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.0E-8 | 390 | 414 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.2 | 390 | 412 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 392 | 412 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.11E-8 | 461 | 488 | No hit | No description |
Pfam | PF13912 | 1.4E-10 | 465 | 488 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.432 | 466 | 488 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 466 | 488 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 468 | 488 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MFAEFLTEME DNQDLNFVGD KKSLCGNSLG GDMRSHVVEG NVEKFESWSS RETPHQSKFD 60 VGSHSGYGLR ENPKKTWRAV DSTFSPLPPQ ERVCQQCGKV FQSMKALCGH MACHSEKLVM 120 DSHSDTETDD DDDDEEEETK MKTRSLKTKR YKRLVAKPSN YCLVNNNSNN NNGVVNYGSS 180 SVSEIDELDQ EEVVAKCLMM LSRDTGNWNG VNSVVESSDN NSVVLETKSS STDMKFGRKD 240 RLKCVYNQNE TPGTKKLSGL DVDQAESESS DSGYFLDDNT IVESDISVDG FNRNGNSKWS 300 TSQMSHAESG VDKGKGLNRT KKYPIESRKD LTAECDYDYY AIASYIDKCE PRKRMKDSSY 360 HSELGNKFVK KIKLGPKSSE GCNAIQKKKY ECLNCKKSFN SYQALGGHRP CHKKANAYLE 420 SINGTGESSV DDKNRETFSS RTPASTAKDQ SYNPEKTIKP KKSQRHECPF CDRVFKSGQA 480 LGGHKRSHFV VGTEQNMNRS SAVKKVDDLL DLNLPAPLDD DDDEHAHLVS W* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC225040 | 0.0 | AC225040.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0079C22, complete sequence. | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239066.2 | 0.0 | uncharacterized protein LOC101247524 | ||||
TrEMBL | A0A3Q7H8C8 | 0.0 | A0A3Q7H8C8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g012490.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1343 | 22 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 2e-34 | C2H2-like zinc finger protein |