PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g009660.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 485aa MW: 53270.6 Da PI: 6.578 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.8 | 1.3e-09 | 196 | 237 | 5 | 46 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++Lk Sopim05g009660.0.1 196 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQELK 237 7789*************************9888888887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-7 | 190 | 239 | No hit | No description |
SMART | SM00338 | 6.3E-7 | 192 | 257 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.507 | 194 | 238 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-6 | 196 | 237 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.61E-6 | 196 | 238 | No hit | No description |
CDD | cd14708 | 2.72E-21 | 196 | 247 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 199 | 214 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.2E-30 | 281 | 354 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MQAFKEAAVT INNNNSNSNS NSSMYCHSSY YLRGDEDSRL AARFADIGEL EQSTGFTQDD 60 AVDLSRSTVY GEMRPNNVGI VSCNNNNLHF GELNTSIGSS ETGVETGRFM LQKAQTGMVG 120 GGGGGGGVVG GGVALGNVQH FENWGDSGIA DHSQQTDTST DVDTDERNHQ GQGVQHGALI 180 AVDSMDLSKV KLGDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLS QLEQELKRAR 240 QQGIFIANGY AGDQSLSAGG NGALAFDMDY ARWLDEHQRL ISDLRSAVNS HRGDNELRHL 300 VDGVMSHYDE KFKLKSVGLK ADVFHMLSGM WKTPVERCFM WLGGFRSSEL LKILGNHLEP 360 FTEQQLIGIC NLQQSSQQAE DALSQGMEAL QQLLVDTLSS TSLGPSGSGN VADYMGQMAI 420 AMNQLATLEN FLYQADLLRQ RTLQQLHRIL TTRQAARALL VISDYMSRLR ALSSLWLARP 480 KDQL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 1e-148 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239421.1 | 0.0 | transcription factor TGA2.3-like | ||||
Swissprot | Q41558 | 1e-176 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | M1AZL1 | 0.0 | M1AZL1_SOLTU; Uncharacterized protein | ||||
STRING | Solyc05g009660.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA820 | 23 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68640.1 | 1e-132 | bZIP family protein |