PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim04g078670.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 273aa MW: 30073.1 Da PI: 6.7094 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.5 | 2.2e-26 | 9 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyW 83 lppG +F P+d++l+++yL k ++ ++ i+e+d+y+++P +Lp ++ ++++w+ F+ r k +r + gyW Sopim04g078670.0.1 9 LPPGTQFYPSDQQLISYYLSSKNGVDHrnGVGFDLIREIDLYNFDPFNLPDsacfRYGRggRKRHWFCFVARVLKG-----GRRRAGGGYW 94 79******************996555532445688**************944666333422444666666665543.....2445689*** PP NAM 84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ g+ ++v+ + ++ +vg++k++ fy g+ +ktdW+m ey+l Sopim04g078670.0.1 95 KKRGRVRDVVGAgaGKIVVGTRKSFEFYLGDC---TKTDWLMYEYAL 138 **********99767778**********7655...56********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-32 | 6 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.575 | 9 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-17 | 10 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGDTTSFSLP PGTQFYPSDQ QLISYYLSSK NGVDHRNGVG FDLIREIDLY NFDPFNLPDS 60 ACFRYGRGGR KRHWFCFVAR VLKGGRRRAG GGYWKKRGRV RDVVGAGAGK IVVGTRKSFE 120 FYLGDCTKTD WLMYEYALTG HPMASFVLCR VFIKSHHGNN LSGHVFSSNG EEIVATVRHI 180 GIQFDGSAAL VTGSKMHDEN MIDQENDVSK LPSGLVPDLN GQVVAENVAK QICLESNGPP 240 ILNDYSAQEL IAILEGDFIE LDDLLCPLPG IN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-23 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-23 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-23 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-23 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-23 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-23 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-23 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-23 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 91 | GGRRRAGGG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238138.1 | 0.0 | NAC domain-containing protein 19-like | ||||
TrEMBL | A0A3Q7G900 | 0.0 | A0A3Q7G900_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g078670.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13528 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 6e-20 | NAC domain containing protein 19 |