PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim04g015570.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 278aa MW: 31404.9 Da PI: 8.3814 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 216 | 238 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L H ++ H Sopim04g015570.0.1 216 PCPQCHLRFSTVRALIDHVQKvH 238 5*****************99988 PP | |||||||
2 | zf-C2H2 | 15.4 | 5.2e-05 | 250 | 272 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ L+ H + H Sopim04g015570.0.1 250 VCPRCSKGFRDPVALVEHVEReH 272 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 1.18E-10 | 4 | 59 | No hit | No description |
Gene3D | G3DSA:4.10.1110.10 | 3.2E-9 | 10 | 53 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS51039 | 7.376 | 10 | 55 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0062 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 6.4E-12 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 3.1E-10 | 90 | 149 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 4.91E-9 | 93 | 149 | No hit | No description |
PROSITE profile | PS51039 | 7.872 | 98 | 145 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.02 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 8.7E-8 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.036 | 215 | 238 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13894 | 0.001 | 216 | 238 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 217 | 238 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.974 | 249 | 277 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.1 | 249 | 272 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 251 | 272 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
MGTPEFPNLG KHCSVEDCRQ IDFLPFTCDC CFKVYCLDHR SYIRHQCPTA NKNNVTVVIC 60 PLCAKGVRLN PVEDPNITWE SHVNTECDPS NYEKATKKKK CPVPRCKELL TFSNTIKCRD 120 CTIDHCLKHR FGPDHSCAGP KKPEATFQFM NFLNGSKEDS KKAQPTTTSR WTTSLLKVVS 180 SVKEKFNNEF NQPQQMGQSS RATNHSVTNN SSQVEPCPQC HLRFSTVRAL IDHVQKVHEK 240 NGVMNMTIDV CPRCSKGFRD PVALVEHVER EHKGSSM* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001317005.1 | 0.0 | stress-associated protein 13 | ||||
Swissprot | Q8VZ42 | 1e-118 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A3Q7GSA1 | 0.0 | A0A3Q7GSA1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g015570.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5311 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-120 | C2H2 family protein |