PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g011650.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 668aa    MW: 74925.4 Da    PI: 9.8362
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g011650.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07544593147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  Sopim04g011650.0.1 544 RRPFSVAEVEALVEAVEQLGTGRWRDVKIRAFeyaDHRTYVDVKDKWKTL 593
                         6789999*******************9988889999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.31E-8350435IPR029071Ubiquitin-related domain
PROSITE profilePS500539.613354424IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.906.2E-4357424No hitNo description
PROSITE profilePS5129416.891539598IPR017930Myb domain
SMARTSM007172.2E-7543596IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-9544594IPR009057Homeodomain-like
SuperFamilySSF466892.32E-15545626IPR009057Homeodomain-like
CDDcd116602.44E-14545595No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MSSKKRVRHG FSGFEFPVIP KAPRSVRRRH SHKNINNDQI CAFELLATVA GELLQESESS  60
ACSSAVIGKD KLSDCREVVK REQLKEDKAV KSECFDQGSC VESAYLPEPA VQEPNLKYSL  120
DKPNRIENNI FRTEVEGASS NLEDVYDKRT DTGTQKQLTD DGKQTEDLTL ANSSSVKGPI  180
EKRVNNNSAI NSDSSVQLPW YRAVPRPSFG KQRNNVKLGI RDDDENSFGS YRHNTNIRAF  240
RQTSRNGYKS MRKMLTSRRW KVAPQLKDWE RSCSKYGMKS FHRNRKRVCA LERCRFEIPS  300
KRRKLCHYSL AVAYDQQANS KSISNSPEKG IKRDITGAGA SASVRNHRKK DSNVKFSIKS  360
FKVPELFIEV PENETVGSLK RTVMDAVKSI LGSGLRVGMV VQGKKVRDDN KTLQQAGISQ  420
NGNLDTLGFT LEPSSYPVSP SLHSKDLPAL SPYVADHELT RRPPSPIMEL ELPSFSSALS  480
ETRLDEHDKD YHELALSPTN PIDPPSDVAI SDSRALVVPN AEAHPVVPVN PKNRCSEHSQ  540
RRTRRPFSVA EVEALVEAVE QLGTGRWRDV KIRAFEYADH RTYVDVKDKW KTLVHTASIA  600
PQQRRGEPVP QELLDRVLVA HDYWSKQHGK NQAEPAKMTE AQLLHVGTLE NSNNSNSMPS  660
KMVGSAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-585286481121Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284303RKRVCALERCRFEIPSKRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236731.10.0telomere repeat-binding protein 3
TrEMBLM1A7D50.0M1A7D5_SOLTU; Uncharacterized protein
STRINGSolyc04g011650.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-102TRF-like 2