PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g005170.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 192aa    MW: 22298.6 Da    PI: 6.363
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g005170.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.14.5e-1481140564
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                         +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN  L+++l++ ++  +k+ +e++
  Sopim04g005170.0.1  81 RKQRRMISNRESARRSRMRKQRHLDELWSQVVRLRTENNNLINKLNQVSESHEKVVQENM 140
                         79**************************************************99999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.6E-1677141IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.26679142IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.45E-1281131No hitNo description
PfamPF001707.3E-1281140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.4E-1181134No hitNo description
CDDcd147027.36E-1982132No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MISSEAATIH YLAQENPSSL PIDYTFTHKN FQFNNTFLTN NYQSFTFPIQ DLISTQPASC  60
ISSNSTSDES EEQQHRIIDE RKQRRMISNR ESARRSRMRK QRHLDELWSQ VVRLRTENNN  120
LINKLNQVSE SHEKVVQENM QLKDEAYDLR RLLVDIQVAT PFNGFSNIDD NVPSSLKTES  180
SNQSTTERKL E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100RRSRMRKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237067.11e-139basic leucine zipper 43
TrEMBLA0A3Q7FUZ01e-137A0A3Q7FUZ0_SOLLC; Uncharacterized protein
STRINGSolyc04g005170.1.11e-138(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-47basic leucine-zipper 42