PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g005130.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 228aa    MW: 25026.8 Da    PI: 6.97
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g005130.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-10110157455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopim04g005130.0.1 110 SHSLAERARREKISDRMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 157
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.03E-10104161No hitNo description
SuperFamilySSF474592.09E-17104175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-18106175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.421106156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7110157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-10112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDPHSTIMSA FQTATNLAEI WPYHHLLDHT TNHAATKRRD DDESAIAVST SGNALTESDS  60
KRLKATRSNE NGEYSGGNSG KSSDQPAKPP AEPPKDYIHV RARRGQATDS HSLAERARRE  120
KISDRMKILQ DLVPGCNKVI GKALVLDEII NYVQSLQRQV EFLSMKLEAV NTRVTPTIEG  180
IPTKDFGQQT FETNAMAFGS QGTREYAGGT SPDWLHMQIG GGFERTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755163e-98HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237071.11e-171transcription factor BHLH089-like isoform X2
SwissprotQ69WS32e-74BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A3Q7FY751e-170A0A3Q7FY75_SOLLC; Uncharacterized protein
STRINGSolyc04g005130.2.11e-171(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-82BIG PETAL P