PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g120890.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 351aa    MW: 37951.8 Da    PI: 6.6926
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g120890.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17239273135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Sopim03g120890.0.1 239 CLHCASDKTPQWRTGPLGPKTLCNACGVRYKSGRL 273
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-796327IPR016679Transcription factor, GATA, plant
SMARTSM004014.8E-15233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.374233269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-13235270IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.71E-14235296No hitNo description
CDDcd002021.10E-13238285No hitNo description
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
PfamPF003203.1E-15239273IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEASDLFVSG FFSHAGDEQI PNNINNNCNN FSVDDLLVIP KDDEVMADAF FNSITGNSAD  60
SSNVTVVDSC NSSVSGGDGQ FNGNLSGRSF TDAPFPNSEL CVPFDDLAEL EWLSNFVEES  120
FSSDDVQNLQ FIPVANINSS STVTTDSSSS ATTFSTGPNS PPAFPADTSV PGKARSKRSR  180
AAPCDWSSRL QLLLSPATSS SESNNISPPS VNNTTFATAK ATKAPSKKRE SVETPGRKCL  240
HCASDKTPQW RTGPLGPKTL CNACGVRYKS GRLVPEYRPA SSPTFISARH SNSHRKVLEL  300
RRQKDLQRHQ AHHHQHQLLS QPTIFGVSNG GDEFLLHHHQ NCGPNFRHLI *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235652.10.0GATA transcription factor 12
SwissprotP697814e-76GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A3Q7GKQ80.0A0A3Q7GKQ8_SOLLC; GATA transcription factor
STRINGSolyc03g120890.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-68GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]