PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g119680.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20293.2 Da    PI: 7.2605
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g119680.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.21e-081561147
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                        k ie++  r+v+fskR+ +++         ++a+v v++fs++gk y
  Sopim03g119680.0.1 15 KLIESEKARTVSFSKRKRTLFQDVDKFAAQTGADVGVMLFSPSGKPY 61
                        569*****************************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.105767IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-12766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-18887IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-5929IPR002100Transcription factor, MADS-box
PfamPF003191.3E-141762IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-54465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MENETKKGKQ KIEMKLIESE KARTVSFSKR KRTLFQDVDK FAAQTGADVG VMLFSPSGKP  60
YSHGSTSIEE IIDQYLKVKL EDHQRDHAEG KMNGFEVLGA LHKELQAWNE KEKNRKLMYK  120
IMHSGSEAPP DKHMEEQKLA LKLRVEKIKK ETQAAILVEH LKFDLNVAPE PEEDESS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771453.11e-124MADS-box transcription factor 23-like
TrEMBLA0A3Q7I4P32e-89A0A3Q7I4P3_SOLLC; Uncharacterized protein
STRINGSolyc03g119680.1.11e-127(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-16AGAMOUS-like 61