PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim03g113270.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 324aa MW: 36648.2 Da PI: 4.8893

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g113270.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.2e-19	90	143	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ F +++++ e++ +LAk+lgL+ rq+ +WFqNrRa++k Sopim03g113270.0.1 90 KKRRLTDNQVQFLEKSFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWK 143 56689************************************************9 PP
2	HD-ZIP_I/II	129	1.9e-41	89	179	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+++qv++LE+sF ee+kLeperKv+la+eLglqprq+a+WFqnrRAR+ktkqlEkdy+ L+++yd+lk++ ++L ke+e+Lr+e+ Sopim03g113270.0.1 89 EKKRRLTDNQVQFLEKSFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKTKQLEKDYDELRNRYDTLKSNYNNLLKEKEDLRTEV 179 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.17E-19	80	147	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.572	85	145	IPR001356	Homeobox domain
SMART	SM00389	6.8E-19	88	149	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-16	90	143	IPR001356	Homeobox domain
CDD	cd00086	1.67E-17	90	146	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.3E-20	91	152	IPR009057	Homeodomain-like
PRINTS	PR00031	6.3E-6	116	125	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	120	143	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.3E-6	125	141	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.2E-15	145	186	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAPGILYGGS SNFDGVFTQK QRDVFSSSTA PKGHLGSLFA PASSSSNFLG SSSMVSFRGV 60 NGGKRSFFDS FDQDDNEADE LGEYLHQAEK KRRLTDNQVQ FLEKSFGEEN KLEPERKVQL 120 AKELGLQPRQ IAIWFQNRRA RWKTKQLEKD YDELRNRYDT LKSNYNNLLK EKEDLRTEVF 180 RLTGKLFIKE KGNGQLDLRD EHKHSNALAK ETVVDPMSNV PALVVKHQQE DLSSAKSDVF 240 DSESPRYTSR MHSSVVDQDD SARAFETDQS DSSQDDDENF SKNMLSTANL LGKDADDDYP 300 ATSSNLSYFG FPVEDQGFGF WTY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	RRARWKTKQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
GenBank	X94947	0.0	X94947.1 L.esculentum mRNA for homeobox protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234250.2	0.0	homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A3Q7FRX5	0.0	A0A3Q7FRX5_SOLLC; Uncharacterized protein
TrEMBL	Q43529	0.0	Q43529_SOLLC; Homeobox
STRING	Solyc03g113270.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA825	24	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-42	homeobox 1