PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g082810.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 220aa MW: 25054.7 Da PI: 7.0706 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.7 | 1.1e-23 | 137 | 195 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYG K +s+f +sYYrC a +Cp+++++++s++dp+ v++tY+g+Hnh+ Sopim03g082810.0.1 137 ADQWRWRKYGMKRTGDSTFLKSYYRCNEAnDCPARRHIQKSSTDPNKVIVTYRGQHNHP 195 59*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-23 | 131 | 196 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.504 | 131 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-20 | 135 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-22 | 136 | 196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-20 | 138 | 195 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MAENENDWDL WAVVRSCGKR NNSVHDDMNV NNTSVLEDPT HVTDRVGDFT GLEHRHYFGL 60 DEIISLSNNL NTTNSKIENQ TETIPNTPLV VVEHEEKKKK KVRFSMQISS TEAGNTFSYR 120 GKSTERYEIL AEKLSEADQW RWRKYGMKRT GDSTFLKSYY RCNEANDCPA RRHIQKSSTD 180 PNKVIVTYRG QHNHPHIAMV HGSPNAAAPL EEPSFPSST* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235113.1 | 1e-166 | WRKY transcription factor 22-like | ||||
TrEMBL | A0A3Q7FMU1 | 1e-165 | A0A3Q7FMU1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g082810.1.1 | 1e-165 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11091 | 13 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30650.1 | 6e-17 | WRKY DNA-binding protein 14 |