PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g045030.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 184aa MW: 21240.9 Da PI: 10.7842 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 97.7 | 2.1e-30 | 75 | 174 | 3 | 100 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 +++++ ki T++g+RdRR+Rls++ a++fFdLq+ LGfdk+skti+WL++ ++ a elt+ s+ + ++ ++s s+s+++++ +k+++ Sopim03g045030.0.1 75 KRERSCGKILTAQGPRDRRIRLSINMARKFFDLQELLGFDKPSKTIDWLFTHSELALEELTNWSTHQTHRPkISGSLSKSNQQQGFRKKSQ 165 4666778*******************************************************97666644443333333333333332222 PP TCP 93 saa.kskks 100 +++ ++ k+ Sopim03g045030.0.1 166 KSKrSNTKR 174 222122222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.025 | 75 | 134 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.6E-28 | 81 | 172 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MFSASNSSTH DNPLPHYISS SFHTSSPFLG FTGNQILLHQ YYQNQFSSHY YLAKNNEDYC 60 DNSLRSFPMK KKSKKRERSC GKILTAQGPR DRRIRLSINM ARKFFDLQEL LGFDKPSKTI 120 DWLFTHSELA LEELTNWSTH QTHRPKISGS LSKSNQQQGF RKKSQKSKRS NTKRVKEKGK 180 STS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010317815.1 | 1e-107 | transcription factor CYCLOIDEA | ||||
Swissprot | Q9SBV6 | 3e-26 | CYCLD_ANTLN; Transcription factor CYCLOIDEA (Fragment) | ||||
TrEMBL | K4BGB5 | 1e-132 | K4BGB5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g045030.1.1 | 1e-133 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4333 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 8e-22 | TCP domain protein 12 |
Publications ? help Back to Top | |||
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