PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g043820.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 127aa    MW: 14830.2 Da    PI: 10.4824
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g043820.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.86.2e-1049106461
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                          k+ rr ++NR++A+rsR RK ++i+ L++++k Le+       ++e+ k++ +kl+ 
  Sopim03g043820.0.1  49 MKKLRRTISNRLSAQRSRMRKTQYIDLLKKEAKDLEEMIAFFGRKIENDKDNNKKLQL 106
                         699*********************************9888888888888888777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.002646110IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.44E-949104No hitNo description
PfamPF001704.1E-949107IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.8E-1150105No hitNo description
PROSITE patternPS0003605368IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MNEKRIKSDE PRLSLSLKTP FESVNKIPSL EEALNSELQH GQVDPNMNMK KLRRTISNRL  60
SAQRSRMRKT QYIDLLKKEA KDLEEMIAFF GRKIENDKDN NKKLQLETSL TNLIYSQCKM  120
KSWKLS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755157e-82HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069615.22e-66transcription factor HY5-like
TrEMBLK4BG026e-85K4BG02_SOLLC; Uncharacterized protein
STRINGSolyc03g043820.1.19e-86(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76151929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07160.13e-08bZIP family protein