PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g043810.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 125aa    MW: 14389.7 Da    PI: 10.8639
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g043810.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.28.7e-095186439
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39
                         k+ rr ++NR++A+r R RK ++++ L++++k+Le
  Sopim03g043810.0.1 51 MKKLRRTISNRLSAQRARMRKIEYTDGLKKEAKNLE 86
                        6999*****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579591.42E-85194No hitNo description
PfamPF001701.5E-75186IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-95286No hitNo description
PROSITE patternPS0003605570IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MNEKRNKSAE PNLSLSLKTP IEYESINNIP TLEEAVNLEL KNGQVDPNVN MKKLRRTISN  60
RLSAQRARMR KIEYTDGLKK EAKNLEIIFG EWRRIVSFGK GTVKDPPKPR QFHTKVFIVK  120
REAI*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755158e-88HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069614.28e-52basic leucine zipper 34-like
TrEMBLK4BG012e-84K4BG01_SOLLC; Uncharacterized protein
STRINGSolyc03g043810.1.14e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76151929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07160.13e-07bZIP family protein