PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g026250.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 334aa    MW: 37912.9 Da    PI: 4.8895
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g026250.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like20.98.2e-07166189125
             G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                         k+rl+Wt+ LH++F+ea++ L G +
  Sopim03g026250.0.1 166 KTRLVWTEYLHNKFLEAITIL-GLK 189
                         68*******************.555 PP
2Response_reg61.64e-21181261109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         +l+vdD+ + + +  ++l+ke++ +v +++++ eal +l  +e+ +Dl+++ ++ p m+Gl+l ++i++   ++p++++++ ++e  +++ 
  Sopim03g026250.0.1  18 ILVVDDDTSSLLITSELLKKENF-KVVTVKNANEALSTLqiNENSFDLVIIEVRVPVMNGLQLQQQITNGF-NIPVVLISDDKSECGIIQG 106
                         89*********************.*************99445555**********************9988.******************* PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga    +Kp++++++++
  Sopim03g026250.0.1 107 FESGAVFLMVKPISQNDVHE 126
                         **************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.99E-2614139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.4E-2814141No hitNo description
SMARTSM004483.1E-2016128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.91317132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-1718126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.76E-2019132No hitNo description
Gene3DG3DSA:1.10.10.601.1E-5164193IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEVENECYDN EFLEKISILV VDDDTSSLLI TSELLKKENF KVVTVKNANE ALSTLQINEN  60
SFDLVIIEVR VPVMNGLQLQ QQITNGFNIP VVLISDDKSE CGIIQGFESG AVFLMVKPIS  120
QNDVHELWQY AIMQRKKKKN RGKQGIVQEN TNEEIVAENL ITPPKKTRLV WTEYLHNKFL  180
EAITILGLKI TAPIDTSRKP ISKSRIGNAR KAIQLAATST QQLMTENSNS VTAHNDELVA  240
PFQRDPKDKI FTDMLSYHLS REYRDRINNF YSIMNSNMQI TNASNNVQSS IMENNNIEEG  300
TNLSFVDGNN QYQQAYFPWV DHTLDQASLS YIL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-172HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886047.10.0two-component response regulator ARR14-like
TrEMBLA0A3Q7FF520.0A0A3Q7FF52_SOLLC; Uncharacterized protein
STRINGSolyc03g026250.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.13e-23response regulator 10