PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g007640.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 360aa MW: 41141.2 Da PI: 7.5428 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82.5 | 4.2e-26 | 198 | 255 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dD+++W+KYGqK++kgs+fpr+Y++C+ ++C+++k +e+s +++k++ + Y++ Hnh+ Sopim03g007640.0.1 198 DDKWAWQKYGQKSIKGSPFPRNYFKCSASNCKATKIIEKSPKNEKYFLVSYSDVHNHD 255 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-24 | 187 | 257 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-22 | 192 | 257 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.58 | 192 | 257 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-26 | 197 | 256 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-19 | 198 | 255 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEDNDWDLSA VVRSCNIIIN KPTNVTASEN DSYTFEKTLD FSVGREKKSN DQVVITNQNQ 60 EMYLHPTQPN QFSEENILPS LPTTVTTGVP TTTTTTTPQE SIYVHQQLEK SNDQVIIMNQ 120 NKNPMMYLEP QFRQQIFLPP LPTTTTPEES VNQQQLVVHD QVYPNITMPV QNSMIRTFKR 180 RDQSPRVFNE VLQEELTDDK WAWQKYGQKS IKGSPFPRNY FKCSASNCKA TKIIEKSPKN 240 EKYFLVSYSD VHNHDPPPSR RSLALYNNIS KRRLPKSINI VPKALKLNAS SSSSSSSSSS 300 KRAKRVKVDA SSTAPKPEIK KNNEMVDDVV ENKGDIIEEE EITYDKIFMD FENSNKLYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-16 | 195 | 258 | 12 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238467 | 0.0 | AC238467.1 Solanum lycopersicum chromosome 3 clone C03HBa0257N18, complete sequence. | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010317518.1 | 0.0 | probable WRKY transcription factor 27 | ||||
TrEMBL | K4BEI6 | 0.0 | K4BEI6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g007640.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3668 | 13 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 7e-24 | WRKY DNA-binding protein 27 |