PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g006800.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 327aa    MW: 34792 Da    PI: 5.4993
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g006800.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.66.3e-36881793100
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                         + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++ ++ti WLl+ a+pai+++tgt++ +a ++  +++ +  +sn++ +    
  Sopim03g006800.0.1  88 PVKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSEGETIRWLLERAEPAIIAATGTGTVPAIAVsVNGTLKIPTSNNEGE---- 174
                         5699***********************************************************999995553222222222211111.... PP

                 TCP  93 saakskks 100
                            +s+k+
  Sopim03g006800.0.1 175 ---SSRKR 179
                         ...11111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-2992172IPR005333Transcription factor, TCP
PROSITE profilePS5136926.31293147IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MARVENNQNI EQEDDEVNDC KIDPLLGDSH EYTIAAVGNV TDAEGVDPSP AASTDRVLLL  60
KEEPEENDLR VSTSVGMNMQ LQKVEKQPVK RSSKDRHTKV EGRGRRIRMP AACAARIFQL  120
TRELGHKSEG ETIRWLLERA EPAIIAATGT GTVPAIAVSV NGTLKIPTSN NEGESSRKRR  180
KRAANSEFYE ASNFAPVAPI APQGLVPVWP VGSGNGLIPT TAFTGGATFY MLPPGTNTTV  240
AATGAQLWAT PILNVPYAAT GVSAACVSKS DNNGGKLSTV ASAMPPSSSS TQMLRDFSLE  300
IYDKRELQFM VGSGSSEIDQ TSSSKS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358000.0AC235800.1 Solanum lycopersicum chromosome 3 clone C03HBa0137K15, complete sequence.
GenBankGQ4963390.0GQ496339.1 Solanum lycopersicum TCP transcription factor 21 (TCP21) mRNA, complete cds.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233826.10.0TCP transcription factor 21
SwissprotQ9LT899e-65TCP19_ARATH; Transcription factor TCP19
TrEMBLG3BGW10.0G3BGW1_SOLLC; TCP transcription factor 21
STRINGSolyc03g006800.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.28e-62TCP family protein