PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g091440.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 318aa MW: 35138 Da PI: 6.5203 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.4 | 3e-09 | 234 | 277 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq Sopim02g091440.0.1 234 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAIGYVKFLQ 277 5679*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.513 | 227 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 228 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-13 | 229 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.35E-10 | 229 | 281 | No hit | No description |
SMART | SM00353 | 7.4E-11 | 233 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-6 | 235 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MSMALAKEHV IMSDTKMGMV DNYDQYYEGE FGINDHSSPE LYGIHEEPPK SIFEECENSE 60 KTSPKIAKNF ALSSSNSSLS SPSSSNSNAQ SVINFKGVYG NFMHSANGSL LSFEQSERFC 120 PNPRMISNIN QVEGSVWEDN NLHYQNCVTP KGSSNTSPRV INDNSNNNGI PFGWLNSEAN 180 ASTTTHIDES RFNKRPSTEE SMQTNKKQCS AGSKKGKPNN NNNNSIGTKD PQSIAAKNRR 240 ERISERLKIL QELVPNGSKV DLVTMLEKAI GYVKFLQLQV KVLATDEFWP TQGGKAPDIS 300 QVKEAIDAIL ATQRDRN* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233620.2 | 0.0 | transcription factor bHLH83-like | ||||
Swissprot | Q9C707 | 3e-56 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | A0A3Q7FAT6 | 0.0 | A0A3Q7FAT6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g091440.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9986 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 3e-58 | ROOT HAIR DEFECTIVE6 |