PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g089420.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 181aa    MW: 21052.5 Da    PI: 6.3486
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g089420.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.92.5e-1481139563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN++L ++l++ ++  +++ +e+
  Sopim02g089420.0.1  81 RKQRRMISNRESARRSRMRKQRHLDELWAQVLWLRNENHQLLDKLNHASERHDQVLQEN 139
                         689********************************************999999888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-1477141IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.51979142IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-1281130No hitNo description
Gene3DG3DSA:1.20.5.1704.1E-1181153No hitNo description
PfamPF001702.6E-1281139IPR004827Basic-leucine zipper domain
CDDcd147027.68E-2082133No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MQPTDVTDFY YLLPSNPTQF PSQSCVNYNP STFQLNTVLN PLYHLQITPQ VQDLNPQLTC  60
FNSNSTSDEA DEQQWTLINE RKQRRMISNR ESARRSRMRK QRHLDELWAQ VLWLRNENHQ  120
LLDKLNHASE RHDQVLQENA QLKNETSELR KMITGMQLSS PCPSSRALEN EPCSGLPQNE  180
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010316197.11e-131basic leucine zipper 43
RefseqXP_015064470.11e-131basic leucine zipper 43
TrEMBLA0A3Q7FXF71e-129A0A3Q7FXF7_SOLLC; Uncharacterized protein
STRINGSolyc02g089420.1.11e-130(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.19e-51basic leucine-zipper 42