PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g089020.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 285aa MW: 31895.3 Da PI: 7.1599 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 99.4 | 6.5e-31 | 45 | 170 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak +i+el+ + Sopim02g089020.0.1 45 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKNEIDELPPLqippgslnpnlypmlgnapqittnkeg 135 689*************************************************************555555555555555433333333333 PP TCP 66 .......ssssaseceaesssssasnsssg.........................k 89 + + Sopim02g089020.0.1 136 rinwdnnI---------------------PleppnnnalgynpnffkwdpsnlslA 170 32222220.....................144444444445455555544333322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.353 | 47 | 105 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.0E-27 | 47 | 110 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MITREEKGNV VNDDGNKSKA CTTSTSTTSW TRLKDPRIVR VSRAFGGKDR HSKVCTVRGL 60 RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLDAAKN EIDELPPLQI PPGSLNPNLY 120 PMLGNAPQIT TNKEGRINWD NNIPLEPPNN NALGYNPNFF KWDPSNLSLA HSENSLSHQH 180 DHHQNFNLMS SMPLTSHHQP VVYPPGLPQF FHQHNNNINV GASSSSEFDP KEINFQMLSN 240 NSGSENPLST STNSFRHSID STNQSIRPFH FLPSQNCDDT EPSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 52 | 106 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 52 | 106 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ496323 | 0.0 | GQ496323.1 Solanum lycopersicum TCP transcription factor 5 (TCP5) mRNA, complete cds. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233792.1 | 0.0 | TCP transcription factor 5 | ||||
TrEMBL | G3BGU5 | 0.0 | G3BGU5_SOLLC; TCP transcription factor 5 | ||||
STRING | Solyc02g089020.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08070.1 | 2e-46 | TCP domain protein 17 |