PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g085610.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 285aa    MW: 30788.7 Da    PI: 5.4687
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g085610.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.86.6e-25186248163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L+ eN++Lk+el++l++e++kl+se+
  Sopim02g085610.0.1 186 ERELKRQKRKQSNRESARRSRLRKQAECEELQRRVEALSHENHSLKDELQRLSEECEKLTSEN 248
                         89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.1E-6125IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1702.3E-21180245No hitNo description
SMARTSM003386.1E-23186250IPR004827Basic-leucine zipper domain
PfamPF001701.9E-22186248IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.369188251IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.88E-12189245No hitNo description
CDDcd147023.33E-22191241No hitNo description
PROSITE patternPS000360193208IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MPPYGTPVPY PALYPPAGVY AHPNIATPAP NSVPANPEAD GKGPEGKDRN SSKKLKVCSG  60
GKAGDNGKVT SGSGNDGATQ SDESRSEGTS DTNDENDNNE FAANKKGSFD QMLADGASAQ  120
NNPAKENHPT SIHGNPVTMP ATNLNIGMDV WNASAAGPGA IKIQQNATGP VIGHEGRMND  180
QWIQEERELK RQKRKQSNRE SARRSRLRKQ AECEELQRRV EALSHENHSL KDELQRLSEE  240
CEKLTSENNL IKEELTLLCG PDVVSKLERN DNVTRIQSNV EEAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202208RRSRLRK
2202209RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX749420.0X74942.1 L.esculentum GBF4 mRNA for G-box binding protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233954.20.0G-box binding protein
RefseqXP_019067522.10.0G-box binding protein isoform X2
RefseqXP_025884849.10.0G-box binding protein isoform X3
SwissprotP427743e-76GBF1_ARATH; G-box-binding factor 1
TrEMBLQ435080.0Q43508_SOLLC; G-box binding protein
STRINGSolyc02g085610.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.23e-72G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]