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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sopim02g085190.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
GATA |
| Protein Properties |
Length: 253aa MW: 27896.7 Da PI: 8.438 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim02g085190.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 63.5 | 2.4e-20 | 131 | 165 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
Sopim02g085190.0.1 131 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 165
********************************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MMHRCSGSMV GPCSCGLFHN QSGSSGTTTS SAFSMLFSHE YSENMYSSSS SNVDCTLSLG 60
TPSTRLINED NHEKRSSVYS KHERLRSSSN CISNFWDILH PKQHVTTPQY KSTRGANNNS 120
TTTDPLVARR CANCDTTSTP LWRNGPRGPK SLCNACGIRF KKEERRASAA AATANGGGGA 180
ETTTHQHWVH HHHHSQPTKM ACFSSASYGN EFRFIEDNEH HRDSDAAATA IPFFPWRLNV 240
ADRPSLVHDF TR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional factor that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (including its own promoter and GATA21 promoter), thus regulating the expression of genes mostly involved in hormone responses and floral organ specification (including genes regulating hormones responses) (PubMed:23335616, PubMed:26390296). Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:15367721, PubMed:23335616). Coregulates, with AGO10/PNH, the shoot apical meristem (SAM) organization. Regulates floral organ development via the promotion of JAG and NPR5/BOP2 expression. Modulates cytokinin homeostasis in organ boundaries by regulating CKX3 expression (PubMed:26390296). Involved in cell proliferation and differentiation (PubMed:15367721). Required to position the inductive proembryo boundary via the regulation of gene expression and for early embryonic development (PubMed:20643354). Together with GIF1/AN3, mediates cotyledon identity by preventing ectopic root formation through the repression of PLT1 expression (PubMed:22669825). {ECO:0000269|PubMed:15367721, ECO:0000269|PubMed:20643354, ECO:0000269|PubMed:22669825, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:26390296}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed via a negative regulatory feedback loop. {ECO:0000269|PubMed:23335616}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215363 | 0.0 | AC215363.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0030A21, complete sequence. |
| GenBank | AC215378 | 0.0 | AC215378.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0074A14, complete sequence. |
| GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
