PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g084230.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

BBR-BPC

Protein Properties

Length: 289aa MW: 31971.9 Da PI: 8.6866

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g084230.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	294.1	5.5e-90	1	288	29	301
GAGA_bind 29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqls 115 m+++aerda+irern+al e+k a+aerdma lqrd+alaern+ + er+++++al l++ s++ +++g ++ sg+k+i + qq+ Sopim02g084230.0.1 1 MAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNALIQERNDAIAALRLQDSSTNdnnmVPDSPGNGTESGAKHIYNQQQMY 91 899**************************************************999888777664434456677777777776666533 PP GAGA_bind 116 e.......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader............. 186 + +ed+a++ + +++ +i ++++ ke++++k+ + +++ k ++ + +++ ++ Sopim02g084230.0.1 92 RttadaahGSTEDPAAGYLKDTDTSEAKIPKKVKRPKESRHNKQAKIPRVGKISTDS------------LSMQVIATTsddwvnlqemdsd 170 333444434455555555555555555555555555555555555555555554444............3333332212333334444444 PP GAGA_bind 187 .....skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272 + +++k+ +l+l ++++D+s++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++L Sopim02g084230.0.1 171 kegdtQLTSWKD-NLGL-KINFDDSAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRL 259 455544445543.5666.467****************************************************************** PP GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301 aa+Gydls p+DLkdhWAkHGtn++ t++ Sopim02g084230.0.1 260 AAQGYDLSIPLDLKDHWAKHGTNRYSTLK 288 ***********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.9E-79	1	288	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	3.8E-90	1	288	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MAIMAERDAA IRERNMALEE RKRAFAERDM AMLQRDAALA ERNALIQERN DAIAALRLQD 60 SSTNDNNMVP DSPGNGTESG AKHIYNQQQM YRTTADAAHG STEDPAAGYL KDTDTSEAKI 120 PKKVKRPKES RHNKQAKIPR VGKISTDSLS MQVIATTSDD WVNLQEMDSD KEGDTQLTSW 180 KDNLGLKINF DDSAMPVPVC SCTGTPQPCY KWGHGGWQSA CCTTTISMYP LPQISNKRYS 240 RVGGRKMSGG AFSKLLNRLA AQGYDLSIPL DLKDHWAKHG TNRYSTLK*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226503	0.0	AC226503.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0044J01, complete sequence.
GenBank	FJ982304	0.0	FJ982304.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds.
GenBank	FJ982305	0.0	FJ982305.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC2) gene, complete cds.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001266243.1	0.0	GAGA-binding transcriptional activator
TrEMBL	H1ZN87	0.0	H1ZN87_SOLLC; GAGA-binding transcriptional activator
STRING	Solyc02g084230.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	3e-78	basic pentacysteine 6