PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g078130.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 197aa    MW: 21998.9 Da    PI: 8.2657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g078130.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-112270655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksLq 55
                        + +E++RR+++++ + +L +l+ ++   +++K  ls  + Le+A +YIk+Lq
  Sopim02g078130.0.1 22 KTIEKNRRNQMKDLYMKLNSLVHHD---QHTKefLSLPDQLEEAANYIKKLQ 70
                        689*********************8...666669*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.5021669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-82092IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-82270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-92290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.86E-52474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEQQYCSNKP SSSSSCKAAD RKTIEKNRRN QMKDLYMKLN SLVHHDQHTK EFLSLPDQLE  60
EAANYIKKLQ IDLEKMRLKK EALTATAGTL NSNSNSSSNT DGRTLENTLP LPHIDIHNVN  120
SALEVLLITG YDYHFMFNHI IRMLHEDGVQ IISANYTLVG HTIFHSIHSK VGESATSSTA  180
KIISEKLKQF VGAAAT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233835.11e-144transcription factor bHLH162
TrEMBLA0A3Q7F4E71e-143A0A3Q7F4E7_SOLLC; Uncharacterized protein
STRINGSolyc02g078130.2.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-38bHLH family protein