PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g077450.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

VOZ

Protein Properties

Length: 468aa MW: 52068.3 Da PI: 5.0769

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g077450.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	409	8.9e-126	187	406	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlq...dycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataks 88 pppsaflgpkcalwdc+rpa gs+w+q dycs +ha+la neg +g pv+rp g++lkd+llf+alsak++gk+vg+pec gaataks Sopim02g077450.0.1 187 PPPSAFLGPKCALWDCPRPAMGSDWCQkshDYCSDYHAALAPNEGYLGRPPVVRPMGVGLKDSLLFQALSAKAHGKDVGVPECRGAATAKS 277 89*********************976668******************************************************** PP VOZ 89 pwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeinelda 179 pwna+elfdl+++egetirewlffdkprrafesgnrkqrslpdy+grgwhesrkqv++++gglkrsyymdpqp++++ewhlyeyein++da Sopim02g077450.0.1 278 PWNAPELFDLEVVEGETIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVINDYGGLKRSYYMDPQPMKNLEWHLYEYEINKYDA 368 *************************************************************************************** PP VOZ 180 lalyrlelklvdekksakgkvskdsladlqkklgrlta 217 alyrlelklvd+kks+kgkv+++s+adlqk++grl+a Sopim02g077450.0.1 369 WALYRLELKLVDGKKSPKGKVMNESVADLQKQMGRLSA 406 **********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MGKGSKNGAL FKDKAKNRVD DLQGMFMNLQ SARKESRTHD AGLLEEQVHQ MLREWKAELN 60 EPSPASSLQG GSRISSDLYR LLHGEEEDDA TSALAAPKPE PDAQKQDVAG FQEDFNATPV 120 MQEQGYQLDD ECKNTPLAVN NAGINNEGVA TQLDYHSFDL QQDFDQFGFD ALNLCLEENL 180 SPIQISPPPS AFLGPKCALW DCPRPAMGSD WCQKSHDYCS DYHAALAPNE GYLGRPPVVR 240 PMGVGLKDSL LFQALSAKAH GKDVGVPECR GAATAKSPWN APELFDLEVV EGETIREWLF 300 FDKPRRAFES GNRKQRSLPD YNGRGWHESR KQVINDYGGL KRSYYMDPQP MKNLEWHLYE 360 YEINKYDAWA LYRLELKLVD GKKSPKGKVM NESVADLQKQ MGRLSADIPL ENKRSVKGRG 420 KANSKDVVSN GPPAPNQTVP AIEGFDYVAG APFPDYLVDN IGGYYIT*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MGKGSKNGAL FKDKAKNRVD DLQGMFMNLQ SARKESRTHD AGLLEEQVHQ MLREWKAELN  60
EPSPASSLQG GSRISSDLYR LLHGEEEDDA TSALAAPKPE PDAQKQDVAG FQEDFNATPV  120
MQEQGYQLDD ECKNTPLAVN NAGINNEGVA TQLDYHSFDL QQDFDQFGFD ALNLCLEENL  180
SPIQISPPPS AFLGPKCALW DCPRPAMGSD WCQKSHDYCS DYHAALAPNE GYLGRPPVVR  240
PMGVGLKDSL LFQALSAKAH GKDVGVPECR GAATAKSPWN APELFDLEVV EGETIREWLF  300
FDKPRRAFES GNRKQRSLPD YNGRGWHESR KQVINDYGGL KRSYYMDPQP MKNLEWHLYE  360
YEINKYDAWA LYRLELKLVD GKKSPKGKVM NESVADLQKQ MGRLSADIPL ENKRSVKGRG  420
KANSKDVVSN GPPAPNQTVP AIEGFDYVAG APFPDYLVDN IGGYYIT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232932.1	0.0	transcription factor VOZ1
Refseq	XP_010316788.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A3Q7F3H4	0.0	A0A3Q7F3H4_SOLLC; Uncharacterized protein
STRING	Solyc02g077450.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2818	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]