PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g069390.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 307aa MW: 35069.5 Da PI: 8.922

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g069390.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.4	1.7e-17	24	109	2	83
trihelix 2 WtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 Wt +e++ Liea++ ++er + gk + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ +s+ ++ ++ + Sopim02g069390.0.1 24 WTVKETMILIEAKKMDDERRMTrqeGKPTELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRVvESGGEEIIRSYW 109 ***********977776664233789999*************************************9984455555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.236	16	83	IPR017877	Myb-like domain
Pfam	PF13837	4.3E-12	23	94	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MDRLVGDQGG SSSNMFRDYR KGNWTVKETM ILIEAKKMDD ERRMTRQEGK PTELRWKWVE 60 DYCWRNGCLR SQNQCNDKWD NLMRDFKKVR EYERRVVESG GEEIIRSYWK IEKNERKEKN 120 LPTNMLPEIY EALVEVMDKK SQRMLLPSLP PTLQQQSTPL PIPPITTTVT QTDYTTNVPF 180 TTMCDSSDPD HSSERSDSPA KKRRMRGGGE GTSGTSKRNI NNSSQEVGSA ISKSAAIIAE 240 AIQSCEERGD RRHKELLSLH QRRLQIEESK VEINKEGING LVDSINKLAN SILALAGNKN 300 QSTDPK*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233893.1	0.0	trihelix transcription factor ASR3
TrEMBL	A0A3Q7F372	0.0	A0A3Q7F372_SOLLC; Uncharacterized protein
STRING	Solyc02g069390.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4821	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-58	Trihelix family protein