PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g067760.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 196aa    MW: 22413.9 Da    PI: 6.3581
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g067760.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Sopim02g067760.0.1 14 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 61
                        79********************************************97 PP
2Myb_DNA-binding55.41.4e-1767110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Sopim02g067760.0.1  67 RGNITPEEQLLIMELHAKWGNK-WSKIAKHLP-GRTDNEIKNYWRT 110
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-24664IPR009057Homeodomain-like
PROSITE profilePS5129415.919961IPR017930Myb domain
SuperFamilySSF466899.73E-3112108IPR009057Homeodomain-like
SMARTSM007178.1E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-161461IPR001005SANT/Myb domain
CDDcd001673.67E-101661No hitNo description
PROSITE profilePS5129425.80862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2565116IPR009057Homeodomain-like
SMARTSM007175.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.7E-1667110IPR001005SANT/Myb domain
CDDcd001679.61E-1271110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDKICNSQDV EVRKGPWTME EDLILINYIA NHGEGVWNSL AKSAGLKRTG KSCRLRWLNY  60
LRPDVRRGNI TPEEQLLIME LHAKWGNKWS KIAKHLPGRT DNEIKNYWRT RIQKHIKQGE  120
NMNGQGSSEQ NIDHQEGSSS QISSVGQADN IETYSPTSYN GNLDTNFQAS NFLNETNDNM  180
WSMEDIWSMQ LLNGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001351943.11e-144R2R3-type MYB transcription factor 21
SwissprotP813911e-103MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A3Q7FLV31e-142A0A3Q7FLV3_SOLLC; Uncharacterized protein
STRINGSolyc02g067760.2.11e-143(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.15e-86myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]