PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g062940.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 657aa MW: 68007.6 Da PI: 7.9918 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sopim02g062940.0.1 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP | |||||||
2 | zf-C2H2 | 16.9 | 1.8e-05 | 132 | 154 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H++ + Sopim02g062940.0.1 132 WKCDKCSKKYAVQSDLKAHLKIC 154 58******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-5 | 55 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.99E-8 | 55 | 78 | No hit | No description |
SMART | SM00355 | 0.017 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.0028 | 56 | 78 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 56 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 97 | 127 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 120 | 153 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.99E-8 | 127 | 152 | No hit | No description |
SMART | SM00355 | 38 | 132 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.871 | 132 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 657 aa Download sequence Send to blast |
MNDCVGSGEV SVLSSGDQTA PCKEAAKKKR NLPGMPDPNA EVVALSPKTL LATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVRKRVYVCP ETTCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH LKICGTKEYK CDCGTMFSRR DSFITHRAFC 180 DVLAKDTEKA QNAVTTPIAE EDLKVQVDVS STPQTPRTPP PSSEPPAVPS PAAPEPLPPP 240 GSPSTAVVSS DSPIQHPESP HTNSNGTITK HDIEETTAKS RLSGICSSSS CTGCTNSNCF 300 TSLTGICSSS WSSSSNGSTS NSSIFSSLTG ICSSTRSSSS NGSTGSISVF PSLSGICSNS 360 RSSSSNGSTQ SSSIFSSSTG ICSSSIFPSS TGICSGSSIF ASSTGIYSNS SSLSSNRSTS 420 GSSIFTSLTG ICSSSSNSSS NSTFASLFAS STASGSLPSQ APQFTDWFQS VAPSPPPDIE 480 PPSSMEPISL CLAMNHGSSV FGSTGQERMQ YAAAPQPSMS ATALLQKAAQ MGATATNSSL 540 LRGLGILSSS SSSSGQHEWN GRQIDTDGAT LAAGLGLGLP CDDGSGLKEL MLGTPSVFGP 600 KHPTLDLLGL GMAAGGGSTP GLSALITSMG GNLDVAAAAR PFDSGEFCGK EFGRSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-29 | 128 | 186 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 2e-29 | 128 | 186 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174607 | 0.0 | AC174607.1 Solanum lycopersicum, complete sequence. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233509.1 | 0.0 | protein indeterminate-domain 1-like | ||||
Swissprot | Q9LVQ7 | 1e-113 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A3Q7EZH3 | 0.0 | A0A3Q7EZH3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g062940.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 5e-97 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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