PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim02g030460.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 339aa MW: 38512.6 Da PI: 9.5455 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 56.2 | 9e-18 | 16 | 103 | 2 | 72 |
trihelix 2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt qe+++Liea++ ++er +++ + +W++v ++++++g+ rs++qC++kw+nl +++kk++e e++ + Sopim02g030460.0.1 16 WTIQETMVLIEAKKMDDERRMKRQggdignssssergninkPGELRWKWVEDYCWRHGCLRSQNQCNDKWDNLMRDFKKVREYERRVS 103 *************96666655543345555566666666558899**************************************99864 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.632 | 8 | 89 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-4 | 12 | 90 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 6.3E-12 | 15 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 339 aa Download sequence Send to blast |
MDSSSSMLRD YRKGNWTIQE TMVLIEAKKM DDERRMKRQG GDIGNSSSSE RGNINKPGEL 60 RWKWVEDYCW RHGCLRSQNQ CNDKWDNLMR DFKKVREYER RVSEKLLLAQ GNDDENVIKS 120 YWKIERIERK EKNLPTNMLP EIYEALVQVV DKRGQKMLVG SSFNPTTTSM SPTLQQLQIA 180 TFPLPLPPPP QLLPPRPPLV QPPPPNIPPT QPLPTMCDSS DHDKSEHSDS PAKRRRKGKG 240 GEASGTSGDH HNINNLQEVG SAIFRSATII AKTIKASEEG EDRRHNEMLK LHERRLQIEE 300 SKAEINRQGI NGLVDSINRL ANSILSLASN NNQPPPPK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010315652.1 | 0.0 | trihelix transcription factor ASR3-like | ||||
TrEMBL | K4B595 | 0.0 | K4B595_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g030460.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4821 | 22 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35640.1 | 1e-54 | Trihelix family protein |