PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g104760.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 385aa MW: 43916.4 Da PI: 8.1335

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g104760.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.9	4.7e-22	82	169	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 +W++++v++Li+a ++++e+ ++ kk++W+++s +m+erg+++sp+qC++k+++lnk+++++++ +++t ++++++ ++++ + Sopim01g104760.0.1 82 KWSNDMVKLLITALSYIGEDALSNGvlVKKGKWRAISCVMSERGYRVSPQQCEDKFNDLNKKFRRLNDVLGRGTaCNVVENPVLLEIM 169 7**************998776533499******************************************549999888887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.4E-20	80	195	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MQVNHHLAGY PNQGPVVLMQ HAPQVRSSGV SNMEDTPQEM QLLGAVRLNR VEMPESYHEG 60 LNDAREVSGH TEGKQPVYQR MKWSNDMVKL LITALSYIGE DALSNGVLVK KGKWRAISCV 120 MSERGYRVSP QQCEDKFNDL NKKFRRLNDV LGRGTACNVV ENPVLLEIMD LPNDLKEEMN 180 KILGSRQLFY EEMCSYNNQN RLFLPHDPVV QQSVFWAVRG KYKYETGSMS QDLPLKRNIG 240 GEESLDHNTT ADPNLVQHMP AKRKARGEER NLHMARLSLN GTATLDPDPN MLYPNSNGIQ 300 LSLNKKEKKI QDEHVLLRLQ KMEEQKLLIQ GKLLELEKQR VNLEISCSEE DMGLQKMQLD 360 NKVIKLENKQ LMLELKCGGK QRLV*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MQVNHHLAGY PNQGPVVLMQ HAPQVRSSGV SNMEDTPQEM QLLGAVRLNR VEMPESYHEG  60
LNDAREVSGH TEGKQPVYQR MKWSNDMVKL LITALSYIGE DALSNGVLVK KGKWRAISCV  120
MSERGYRVSP QQCEDKFNDL NKKFRRLNDV LGRGTACNVV ENPVLLEIMD LPNDLKEEMN  180
KILGSRQLFY EEMCSYNNQN RLFLPHDPVV QQSVFWAVRG KYKYETGSMS QDLPLKRNIG  240
GEESLDHNTT ADPNLVQHMP AKRKARGEER NLHMARLSLN GTATLDPDPN MLYPNSNGIQ  300
LSLNKKEKKI QDEHVLLRLQ KMEEQKLLIQ GKLLELEKQR VNLEISCSEE DMGLQKMQLD  360
NKVIKLENKQ LMLELKCGGK QRLV*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00242	DAP	Transfer from AT1G76870	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019067375.1	0.0	uncharacterized protein LOC101264265
Refseq	XP_019067376.1	0.0	uncharacterized protein LOC101264265
Refseq	XP_025883714.1	0.0	uncharacterized protein LOC101264265
Refseq	XP_025883715.1	0.0	uncharacterized protein LOC101264265
TrEMBL	A0A3Q7FAV2	0.0	A0A3Q7FAV2_SOLLC; Uncharacterized protein
STRING	Solyc01g104760.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12585	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	9e-70