PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim01g103780.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 446aa MW: 47550.6 Da PI: 9.42 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.9 | 1.2e-40 | 136 | 239 | 2 | 111 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ Sopim01g103780.0.1 136 PPPKRQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAP--- 223 56799****************************************************************9997777777777754444... PP TCP 92 ksaakskksqksaasalnla 111 +sk++++s +sal+la Sopim01g103780.0.1 224 ----PSKSAPHSFHSALALA 239 ....3333333333333333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.1E-39 | 141 | 242 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.542 | 142 | 196 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 446 aa Download sequence Send to blast |
MELTDLQNNN TNSNSKQQTT TNNTTPSPPL HHQQQHQYQL LSQHHHHQQQ QQLQQQHGRS 60 SVPFMTSISI QPNAQAPITN SATNASPSTS SPTPPQPPHL VDASLAIATR SDTLVDPNKK 120 SQLAIQQTQP VQPQQPPPKR QTKDRHTKVD GRGRRIRMPA ACAARVFQLT RELGHKSDGE 180 TIEWLLQQAE PAIIAATGTG TIPANFSTLN ISLRSSGSTL SAPPSKSAPH SFHSALALAA 240 AHQTPHPFEE GFSQMLGFHH YTHLLTQNPI AESIPGGGGG GGSSGDGGGV GGQEGADNYL 300 RKRYREDLFK EEGSSNQQGE ASGGSSSPSN KQFKGNSPQL PNKPNSQEGV AGPSSNMLRH 360 TNVIPATGLW AVAPPPTSGT TGGSPFWMLP VTSGQTLSAP MASTSGTTTL ESQMWPFPMG 420 SSNTPLHFIN NNHLNILGLE WPKLI* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234831.2 | 0.0 | TCP transcription factor 11 | ||||
TrEMBL | G3BGV1 | 0.0 | G3BGV1_SOLLC; TCP transcription factor 11 | ||||
STRING | Solyc01g103780.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11484 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G58100.1 | 2e-54 | TCP family protein |