PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g098060.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 153aa    MW: 17191.5 Da    PI: 9.8466
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g098060.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF412.4e-131559549
                        SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +s r +tfskR++gi+KKAe L  L+  +v  ++fs++g  y+y
  Sopim01g098060.0.1 15 KQSDRLTTFSKRKKGIFKKAELLESLTSSRVTSVVFSPSGIPYTY 59
                        57899***********************************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.652363IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-9362IPR002100Transcription factor, MADS-box
CDDcd001209.71E-13460No hitNo description
SuperFamilySSF554551.57E-13568IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-9525IPR002100Transcription factor, MADS-box
PfamPF003195.5E-151459IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-92540IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-94061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MGTRKRRTEI EKLTKQSDRL TTFSKRKKGI FKKAELLESL TSSRVTSVVF SPSGIPYTYG  60
NVNSVIKKHF PSCNRSEIST TVMNSHHDVS GESSGSKSLS IPKENGLRRW VEDIDVEGCQ  120
NLNQLFMLKE QLEGTREKII SSDPESFEAL FM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127TRKRRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231248.11e-108agamous-like MADS-box protein AGL23
TrEMBLA0A3Q7F7721e-107A0A3Q7F772_SOLLC; Uncharacterized protein
STRINGSolyc01g098060.1.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.14e-14AGAMOUS-like 23