PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g098050.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 161aa    MW: 18178 Da    PI: 10.4525
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g098050.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.73e-131358348
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                        i  ++ r vtfskRr+g++KKA+    +++ +va i++s+tg+ y+
  Sopim01g098050.0.1 13 IIKETSRMVTFSKRRKGLFKKAKQFESMTGSRVASIVLSPTGRPYT 58
                        556789************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-15362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.979363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-16463IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-11525IPR002100Transcription factor, MADS-box
PfamPF003193.3E-181258IPR002100Transcription factor, MADS-box
CDDcd001203.89E-131758No hitNo description
PRINTSPR004042.6E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGTGKKKIEI EKIIKETSRM VTFSKRRKGL FKKAKQFESM TGSRVASIVL SPTGRPYTCG  60
DVDYAIRTHF SNSGRCMKLL ITDIMNSHDS NSSSNVVVYG ETSRSKFSSA PKKNSLHNWV  120
KRIDVEQCQN LNWLLMLKQQ LEGTKEKIGE DVESFKAFFV *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315464.11e-116agamous-like MADS-box protein AGL28
TrEMBLA0A3Q7EMH01e-115A0A3Q7EMH0_SOLLC; Uncharacterized protein
STRINGSolyc01g098050.1.11e-116(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.11e-09M-type_MADS family protein