PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G17310.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24919.7 Da    PI: 9.616
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G17310.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF663.9e-2155103149
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                  k+ie++++rqvtfskRr g++KK  ELSvL++a++avi fs+ +++y +
  AT1G17310.1  55 KKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRF 103
                  68****************************************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.6747107IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-2547106IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-2348122IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-194969IPR002100Transcription factor, MADS-box
PfamPF003197.3E-2156103IPR002100Transcription factor, MADS-box
CDDcd002665.06E-1961131No hitNo description
PRINTSPR004045.0E-196984IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-1984105IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000052anatomypetiole vascular system
PO:0000056anatomyflower bud
PO:0000084anatomyplant sperm cell
PO:0000115anatomysocket cell
PO:0000146anatomyabscission zone
PO:0005021anatomysepal margin
PO:0009030anatomycarpel
PO:0009032anatomypetal
PO:0009052anatomyflower pedicel
PO:0009081anatomyinflorescence branch
PO:0020030anatomycotyledon
PO:0020093anatomyantipodal cell
PO:0020127anatomyprimary root
PO:0025074anatomyembryo sac
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MKDLFMEGER ETSSMTCLTP KDSVQSPNML VRQPKKETTT QTPKTTRGRQ KIEIKKIEEE  60
TKRQVTFSKR RRGLFKKSAE LSVLTGAKIA VITFSKCDRI YRFGHVDALI DKYLRKSPVK  120
LEGYSGDNAA DEESRRPWWE RPVESVPEEE LEEYMAALSM LRENIGKKIV AMGNDRTVDM  180
VPAWPINVMG WKPTMDMQKL ENLTDGVNRC RVGQNGD
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible260845_at0.0
Expression AtlasAT1G17310-
AtGenExpressAT1G17310-
ATTED-IIAT1G17310-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G17310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G17310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412400.0AY141240.1 Arabidopsis thaliana MADS-box protein AGL100 mRNA, complete cds.
GenBankBT0252840.0BT025284.1 Arabidopsis thaliana At1g17310 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4462580.0DQ446258.1 Arabidopsis thaliana clone pENTR221-At1g17310 MADS-box protein (At1g17310) mRNA, complete cds.
GenBankT13M220.0AC026479.2 Sequence of BAC T13M22 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322190.11e-161MADS-box transcription factor family protein
RefseqNP_173175.11e-161MADS-box transcription factor family protein
TrEMBLA0A1P8AT791e-159A0A1P8AT79_ARATH; MADS-box transcription factor family protein
TrEMBLQ9LN161e-159Q9LN16_ARATH; At1g17310
STRINGAT1G17310.11e-160(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Representative plantOGRP1617761
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  3. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  4. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  5. De Bodt S,Raes J,Van de Peer Y,Theissen G
    And then there were many: MADS goes genomic.
    Trends Plant Sci., 2003. 8(10): p. 475-83
    [PMID:14557044]
  6. Li X, et al.
    A distinct endosomal Ca2+/Mn2+ pump affects root growth through the secretory process.
    Plant Physiol., 2008. 147(4): p. 1675-89
    [PMID:18567829]
  7. Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
    An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
    Plant Physiol., 2010. 154(1): p. 287-300
    [PMID:20631316]
  8. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]