PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g097890.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GeBP

Protein Properties

Length: 454aa MW: 48609.9 Da PI: 6.1255

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g097890.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	110.7	9.7e-35	90	191	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 klfqrlw++eDei lL+G++d+++++g + + d++afye++k++ +++++k+qlveK+rrLKkK+++ v+k+ sgk+++f+++hdq Sopim01g097890.0.1 90 KLFQRLWTDEDEIELLRGFLDYTTQRGLntsspQHHYDTTAFYEQIKSKFQLDFNKNQLVEKLRRLKKKYRTVVSKMGSGKDFVFKSAHDQ 180 579**********************9776433445************************************************** PP DUF573 87 kifelskkiWg 97 +f++s++iW Sopim01g097890.0.1 181 VTFDISNRIWS 191 ********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.7E-33	92	191	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MDSVPNRHHQ ASYDNLDYEV DMDVEGDEDS TSSPSIAGEV TIAVAGVSTG DSGAGMMNPG 60 KRPRIDDFAI PVILPGAVKK PSAGFDESRK LFQRLWTDED EIELLRGFLD YTTQRGLNTS 120 SPQHHYDTTA FYEQIKSKFQ LDFNKNQLVE KLRRLKKKYR TVVSKMGSGK DFVFKSAHDQ 180 VTFDISNRIW STGGSYARSS PGGGSVGFSA PPLEDGGVGL GLEEDLDVNP NPNPDSIVLY 240 HSPKFNLNSN PNGIAIKTPR SHKRSPIPLE AVKVEHQPFQ PPGIRINVQM PATNSNPVAA 300 VPAAPPVSGV AAPQVSGVAT PPVGGTAAPL VAGVAAPAPT TGAASVPNLI EETVRNCVSP 360 IFKELLNNVA NLNGSARGFG FGFGGIGMSP MGLGMSPMGL GFGGGAMSME MMRDEKWRKQ 420 QMLELEVYSK RLELVQDQVK AQLEELRSMG SNT*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MDSVPNRHHQ ASYDNLDYEV DMDVEGDEDS TSSPSIAGEV TIAVAGVSTG DSGAGMMNPG  60
KRPRIDDFAI PVILPGAVKK PSAGFDESRK LFQRLWTDED EIELLRGFLD YTTQRGLNTS  120
SPQHHYDTTA FYEQIKSKFQ LDFNKNQLVE KLRRLKKKYR TVVSKMGSGK DFVFKSAHDQ  180
VTFDISNRIW STGGSYARSS PGGGSVGFSA PPLEDGGVGL GLEEDLDVNP NPNPDSIVLY  240
HSPKFNLNSN PNGIAIKTPR SHKRSPIPLE AVKVEHQPFQ PPGIRINVQM PATNSNPVAA  300
VPAAPPVSGV AAPQVSGVAT PPVGGTAAPL VAGVAAPAPT TGAASVPNLI EETVRNCVSP  360
IFKELLNNVA NLNGSARGFG FGFGGIGMSP MGLGMSPMGL GFGGGAMSME MMRDEKWRKQ  420
QMLELEVYSK RLELVQDQVK AQLEELRSMG SNT*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230126.1	0.0	probable transcription factor At5g28040
TrEMBL	A0A3Q7EMN3	0.0	A0A3Q7EMN3_SOLLC; Uncharacterized protein
STRING	Solyc01g097890.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	1e-45	DNA-binding storekeeper protein-related transcriptional regulator