PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g091400.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 168aa    MW: 18207.1 Da    PI: 7.477
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g091400.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.81.8e-3871071100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r +++ +l++eA ar+rdPvyG+vg+i +lqqq  +l
  Sopim01g091400.0.1   7 PCGACKFLRRKCVKGCIFAPYFDSEQgMAHFAVVHKVFGASNTSKLLLTIPPNKRFETVVTLYFEALARVRDPVYGCVGHIISLQQQAVTL 97 
                         7***********************9988*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +aela+++++
  Sopim01g091400.0.1  98 QAELAYVQAR 107
                         ******9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.0846108IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSNGTGPCGA CKFLRRKCVK GCIFAPYFDS EQGMAHFAVV HKVFGASNTS KLLLTIPPNK  60
RFETVVTLYF EALARVRDPV YGCVGHIISL QQQAVTLQAE LAYVQARISM LHHHHHHLPM  120
PPPTPLQADL AAACCSNVSS SVCTSGDPLI DITDLCNVLD QQLDNSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3441017104LOB family transfactor Ramosa2.1
5ly0_B1e-3441017104LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-155HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229819.11e-122LOB domain-containing protein 19
SwissprotO813223e-53LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A3Q7F4J31e-121A0A3Q7F4J3_SOLLC; Uncharacterized protein
STRINGSolyc01g091400.2.11e-122(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.16e-54LOB domain-containing protein 31