PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g060370.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 98aa MW: 10842.2 Da PI: 4.345 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.3 | 4.1e-11 | 15 | 74 | 40 | 99 |
ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 + sg++W++ + + + +y +++GWk F ++n+LkegD +vF+l+ + ++ e++++++r+ Sopim01g060370.0.1 15 TYSGKKWNLFF--GGAKTKYKFSTGWKIFGDDNNLKEGDGIVFELSeCNpDNVEFKIQILRE 74 569********..99999**************************997777888888888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.802 | 1 | 75 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.67E-11 | 14 | 74 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.0E-8 | 15 | 73 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-10 | 16 | 75 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-10 | 17 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MNKELPFAGG PGVLTYSGKK WNLFFGGAKT KYKFSTGWKI FGDDNNLKEG DGIVFELSEC 60 NPDNVEFKIQ ILRENFPAEL VPEDVEGINT DNPIIIN* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 1e-161 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019068102.1 | 5e-64 | B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A3Q7EF64 | 9e-63 | A0A3Q7EF64_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g060370.1.1 | 1e-63 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-08 | B3 family protein |