PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g007070.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TALE

Protein Properties

Length: 701aa MW: 76787.6 Da PI: 6.6848

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g007070.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.9e-09	401	438	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Sopim01g007070.0.1 401 FEHflHPYPKDSDKMMLAKQTGLTRSQVSNWFINARVR 438 554459******************************88 PP
2	BELL	113.4	1.2e-36	265	336	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY++y++q+q vi+ e++ag+gsak Yt+lAl++iS++FrcLkdai++qi Sopim01g007070.0.1 265 ERQEIQMKKAKLVNMLDEVEQRYRHYHHQMQSVINWLEQAAGIGSAKTYTALALQTISKQFRCLKDAIIGQI 336 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-54	189	334	IPR006563	POX domain
Pfam	PF07526	9.4E-46	196	332	IPR006563	POX domain
PROSITE profile	PS50071	12.147	379	442	IPR001356	Homeobox domain
SMART	SM00389	9.7E-10	382	446	IPR001356	Homeobox domain
CDD	cd00086	6.01E-13	382	443	No hit	No description
SuperFamily	SSF46689	5.99E-17	383	448	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-28	385	448	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	399	438	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MASYFHGNSE IQEGNDGLQT LILMNPGYVG FSEAQHHHAP PPPPQGGGGS NIVFFNSNPL 60 GNSINLSHAP PPPPSQQQQF VGIPLATAAF TAPSQDSGNN NNNNESFSGL HGFLARSSPY 120 GFYNPANDIT AAREVTRAHQ QQQQGLSLSL SSSQQPSFGS FTAAREIVSS PTGSGSASGI 180 QQQQQQQQQS ICSVPLSSKY MKAAQELLDE VVNVGKSMKS SNSTEVVVYN DVKKSKNMVD 240 MDVQLDGVGP AEKDGAPTNE LSTAERQEIQ MKKAKLVNML DEVEQRYRHY HHQMQSVINW 300 LEQAAGIGSA KTYTALALQT ISKQFRCLKD AIIGQIRAAS KTLGEEDSLG GKIEGSRLKF 360 VDNQLRQQRA LQQLGMIQHN AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK DSDKMMLAKQ 420 TGLTRSQVSN WFINARVRLW KPMVEEMYLE EIKEHEQNTL GQEKTSKVGE QNEDSTTSRS 480 IATQDKSPGS DSQKQDNPAS SIPMSNATSI PPIGMNIRNQ SAGFNLIGSP DIESINVTQG 540 SPKKPRSNEM LQHSPNSIPS INMDVKPNEE QMSMKFGDDR QDRDGFSLMG GPMNFMGGFG 600 AYPIGEIARF STEQFSAPYS TSGTVSLTLG LPHNENLSMS ATHHSFLPIP TQNVQIGEPN 660 HEFGSLNTPT SAHSTSNVYE NFNIQNRKRF AAPLLPDFVT *

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MASYFHGNSE IQEGNDGLQT LILMNPGYVG FSEAQHHHAP PPPPQGGGGS NIVFFNSNPL  60
GNSINLSHAP PPPPSQQQQF VGIPLATAAF TAPSQDSGNN NNNNESFSGL HGFLARSSPY  120
GFYNPANDIT AAREVTRAHQ QQQQGLSLSL SSSQQPSFGS FTAAREIVSS PTGSGSASGI  180
QQQQQQQQQS ICSVPLSSKY MKAAQELLDE VVNVGKSMKS SNSTEVVVYN DVKKSKNMVD  240
MDVQLDGVGP AEKDGAPTNE LSTAERQEIQ MKKAKLVNML DEVEQRYRHY HHQMQSVINW  300
LEQAAGIGSA KTYTALALQT ISKQFRCLKD AIIGQIRAAS KTLGEEDSLG GKIEGSRLKF  360
VDNQLRQQRA LQQLGMIQHN AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK DSDKMMLAKQ  420
TGLTRSQVSN WFINARVRLW KPMVEEMYLE EIKEHEQNTL GQEKTSKVGE QNEDSTTSRS  480
IATQDKSPGS DSQKQDNPAS SIPMSNATSI PPIGMNIRNQ SAGFNLIGSP DIESINVTQG  540
SPKKPRSNEM LQHSPNSIPS INMDVKPNEE QMSMKFGDDR QDRDGFSLMG GPMNFMGGFG  600
AYPIGEIARF STEQFSAPYS TSGTVSLTLG LPHNENLSMS ATHHSFLPIP TQNVQIGEPN  660
HEFGSLNTPT SAHSTSNVYE NFNIQNRKRF AAPLLPDFVT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	388	446	5	63	Homeobox protein Meis2
3k2a_B	4e-16	388	446	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004228612.1	0.0	BEL1-like homeodomain protein 1 isoform X1
Swissprot	Q9SJ56	1e-153	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A3Q7ERP5	0.0	A0A3Q7ERP5_SOLLC; Uncharacterized protein
STRING	Solyc01g007070.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-130	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]