PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g034660.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 459aa    MW: 51556.6 Da    PI: 5.9399
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g034660.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.18.6e-22126223185
          trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                       +Wt++ v++Li+++  ++++ + +             +kk++W+ vs+ m++ g+++sp+qC++k+++lnkrykk++++ +++ ++ ++++ +
  Sopen12g034660.1 126 KWTDNVVRLLIQVVACVGDDGSLEGpgvglkrksaclQKKGKWKTVSRIMMSNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCAVVENPV 218
                       7**************8888888433355566667788**********************************************5588998888 PP

          trihelix  81 yfdql 85 
                       + d++
  Sopen12g034660.1 219 LMDSM 223
                       88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.8E-19124250No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MNSSGMGGGF LSGYNGGFLG MNMLQQPEPT SNNAVLGHQM NNNNVQSPVS AKMGLEHEKT  60
IGLMDAQGCM AYGKDKAVGP SNVVNTSNNP NSNTSDEDEP SFNEDGNGEN NNGAPGKKGS  120
PWQRMKWTDN VVRLLIQVVA CVGDDGSLEG PGVGLKRKSA CLQKKGKWKT VSRIMMSNGC  180
HVSPQQCEDK FNDLNKRYKK LNDILGRGTS CAVVENPVLM DSMPQLSAKA KDTVKKILNS  240
KHLFYREMCA YHNGQKIPDC NDLEFPAHSS PVAAPCAKDH NGSQGDEAEE NDESDDDDDE  300
SDDNHGDGDA RKIGDFDERM RRVEENGYFL PQINGNDNFL AEINEFFHDP TKSQWDKKMW  360
IKKRMLQLEE EKIGIQAEAF ELEKRQVKWQ RFCRKKDREF EIERLENKKL MLENEHMALQ  420
LKHKQHELDS KKPNVSFNSA PLSLDRPMGR DQLDAARYH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061498.10.0uncharacterized protein LOC107007399
TrEMBLA0A3Q7JF260.0A0A3Q7JF26_SOLLC; Uncharacterized protein
STRINGSolyc12g100040.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.13e-67