PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g031120.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 329aa    MW: 36246.8 Da    PI: 7.3692
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g031120.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.52.8e-08442537
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       C+ +++ke++ fC+ ++  lC+dC    H+       H
  Sopen12g031120.1  4 QCDVCNKKEAIVFCTADEAALCDDCDHRVHHVnklaskH 42
                      7*************************9997323555555 PP
2zf-B_box23.89.6e-085492238
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                      ++++C+ ++e +  lfC++++  +C++C  ++Hk   Ht
  Sopen12g031120.1 54 QAPMCDICQERRGFLFCQQDRAIMCRECDIAIHKAneHT 92
                      7899*******9*********************878865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.694147IPR000315B-box-type zinc finger
CDDcd000219.62E-7347No hitNo description
PfamPF006433.1E-6443IPR000315B-box-type zinc finger
SMARTSM003367.2E-8447IPR000315B-box-type zinc finger
SMARTSM003361.3E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0453100IPR000315B-box-type zinc finger
PfamPF006438.4E-65492IPR000315B-box-type zinc finger
CDDcd000212.45E-95692No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKIQCDVCNK KEAIVFCTAD EAALCDDCDH RVHHVNKLAS KHQRFSLVQP SPKQAPMCDI  60
CQERRGFLFC QQDRAIMCRE CDIAIHKANE HTQKHNRYLL TGIKLSANSA LYSAPSQSQS  120
QSQSAISSAD SCVSSLKSKD SISKPVAGSV FVSSAITSNS TKGGAVSSAV ESVKVVKEKV  180
GGCNNNVQLV NGGGNNLTSS ISEYLEMLPG WHVEDFLDCS TPNVYSKNIG DEDMLSFWDT  240
DLESQLSSFP PQNVGIWVPQ APPLQESKQE TQIQFFPSQN LNFGGQIGLK ESREVTNIKS  300
SRKWTDDNSF AVPQMKPPST SFKRSRTLW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059817.10.0B-box zinc finger protein 20-like
TrEMBLA0A3Q7JC340.0A0A3Q7JC34_SOLLC; Uncharacterized protein
STRINGSolyc12g089240.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-52salt tolerance homolog2