PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g029210.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 367aa    MW: 39828.4 Da    PI: 6.2916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g029210.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-21160209255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Sopen12g029210.2 160 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 209
                       8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-33159218IPR001471AP2/ERF domain
PfamPF008472.0E-14160209IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22160218IPR016177DNA-binding domain
SMARTSM003801.1E-37160223IPR001471AP2/ERF domain
CDDcd000184.28E-22160219No hitNo description
PROSITE profilePS5103225.686160217IPR001471AP2/ERF domain
PRINTSPR003679.1E-12161172IPR001471AP2/ERF domain
PRINTSPR003679.1E-12183199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MCFLKVANSR KSSEFVRFTD TDDTQTTAVT AIGGGVEGGG QFDYSMYTGY CDSQARDMSE  60
FTHVVSGQDY RPDTRYYSVN SPSSAYSSSS SGSRAVLKRS RDQQEFGTGV SSSSSVKIEE  120
ATSMVAPSIT TIPAFTTTIT TTTGEGSSEE TGGGGDRRRK YRGVRQRPWG KWAAEIRDPH  180
KAARVWLGTF DTAEAAARAY DEAALRFRGN RAKLNFPENA RLSSLPQIQN TITSTVSNPS  240
PLIAQPTSFL NPIQSSDTTR DYWEYSQLLQ NPGDFTDQQP SNLLEQMFVA SSMAMLHSNT  300
LPSISSSSSL ATSATSSTSY PLLFSSYYTP QTNQIQGTNT SSTSTTSSSS FSTTFWSSSS  360
QYPPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-24159217160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160DRRRKY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060005.10.0ethylene-responsive transcription factor ERF110-like isoform X3
TrEMBLE1U2K81e-178E1U2K8_SOLLC; RAP2.6-like protein
STRINGPGSC0003DMT4000484071e-147(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-17ethylene response factor 110