PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g029210.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 366aa    MW: 39699.3 Da    PI: 6.7935
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g029210.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.3e-21159208255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Sopen12g029210.1 159 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 208
                       8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-33158217IPR001471AP2/ERF domain
PROSITE profilePS5103225.686159216IPR001471AP2/ERF domain
SMARTSM003801.1E-37159222IPR001471AP2/ERF domain
CDDcd000184.22E-22159218No hitNo description
PfamPF008471.9E-14159208IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22159217IPR016177DNA-binding domain
PRINTSPR003679.1E-12160171IPR001471AP2/ERF domain
PRINTSPR003679.1E-12182198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MCFLKVANSR KSSEFVRFTD TDDTQTTAVT AIGGGVEGGG QFDYSMYTGY CDSQARDMSE  60
FTHVVSGQDY RPDTRYYSVN SPSSAYSSSS SGSRAVLKRS RDQQEFGTGV SSSSSVKIEA  120
TSMVAPSITT IPAFTTTITT TTGEGSSEET GGGGDRRRKY RGVRQRPWGK WAAEIRDPHK  180
AARVWLGTFD TAEAAARAYD EAALRFRGNR AKLNFPENAR LSSLPQIQNT ITSTVSNPSP  240
LIAQPTSFLN PIQSSDTTRD YWEYSQLLQN PGDFTDQQPS NLLEQMFVAS SMAMLHSNTL  300
PSISSSSSLA TSATSSTSYP LLFSSYYTPQ TNQIQGTNTS STSTTSSSSF STTFWSSSSQ  360
YPPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-24158216160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159DRRRKY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060006.10.0ethylene-responsive transcription factor ERF110-like isoform X4
TrEMBLE1U2K81e-180E1U2K8_SOLLC; RAP2.6-like protein
STRINGPGSC0003DMT4000484071e-146(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-17ethylene response factor 110