PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g010240.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 381aa    MW: 42734.2 Da    PI: 7.1513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g010240.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.6e-14551148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      + rW + Ede+l+++v+++G ++W+ I++ +    t+k+c++rw ++l
  Sopen12g010240.1  5 KRRWNPGEDERLKRLVEKHGAKNWSFISQSFS-SQTEKSCRERWCNHL 51
                      579*****************************.*************96 PP
2Myb_DNA-binding30.11.1e-0961101547
                       -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       TteE++ + +a+ ++G+  W+ I + ++ gRt   +k+ w++ 
  Sopen12g010240.1  61 TTEEEDTIFKAHSKFGNQ-WAMITSLLP-GRTNDFIKNQWNST 101
                       9***************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.153155IPR017930Myb domain
SuperFamilySSF466891.01E-26298IPR009057Homeodomain-like
SMARTSM007177.7E-13453IPR001005SANT/Myb domain
PfamPF002491.0E-12551IPR001005SANT/Myb domain
CDDcd001671.90E-8751No hitNo description
Gene3DG3DSA:1.10.10.609.7E-20758IPR009057Homeodomain-like
SMARTSM007171.1E-656104IPR001005SANT/Myb domain
PROSITE profilePS5129411.90557106IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-1659105IPR009057Homeodomain-like
CDDcd001671.75E-561102No hitNo description
PfamPF002496.2E-761100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGQIKRRWNP GEDERLKRLV EKHGAKNWSF ISQSFSSQTE KSCRERWCNH LNPQSDHHPL  60
TTEEEDTIFK AHSKFGNQWA MITSLLPGRT NDFIKNQWNS TLKRKHSSMS EDLTFENPQL  120
PLKRSFSLGI SINSGNPSES HLKFSRFPEL CHYPPTIPPC QDLPLSTYSP VIPDPLTSLS  180
SYGYDLSNLG ISRFPSLSLY PHIPPLVEFF PHSSVSPVIP NPLTIVSPYG SDIRNSNLAK  240
LPHFSLNSSI TQLGEIMPLS VVSPVLHGPS TTLSLSLPRS KSGENLNLIN RIEKVAELTP  300
VSTSEPNLSN FISQNSTTQN DNSGLTSMEI QLLSPNIWKV LQDMIRKEVK NYVSQLENER  360
DSMNTEATVD ATVNNIGVSK D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-3141053104C-Myb DNA-Binding Domain
1msf_C4e-3141053104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060234.10.0transcription factor MYB41-like
TrEMBLK4DDK61e-156K4DDK6_SOLLC; Uncharacterized protein
STRINGSolyc12g019830.1.11e-157(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1637334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.17e-41myb domain protein 73