PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen12g007010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 340aa MW: 38923.5 Da PI: 8.5668 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.2e-17 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr p++ r+r +lg+f +aeeAa a++ + +l+g Sopen12g007010.1 109 RYRGVRQRH-WGKWVAEIRLPRK---RTRLWLGTFESAEEAAFAYDVEAFRLRG 158 8*******9.**********954...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.24E-33 | 108 | 168 | No hit | No description |
SMART | SM00380 | 7.3E-38 | 109 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-10 | 109 | 158 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-31 | 109 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-22 | 109 | 167 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.604 | 109 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MSMYRPLKKL KISSSSQHNS LRSSGDGVEP VAQRIRARGY EPQFRFPFAL DDPPLSSCHI 60 NWQSLTQNQT MISFAPQSCF NKCRIIDNGT RTTTMMNVYG TVSSPASKRY RGVRQRHWGK 120 WVAEIRLPRK RTRLWLGTFE SAEEAAFAYD VEAFRLRGTD ARLNFPHLFL GDLAPFDNNI 180 NVTNSASSST TSFAKNPFQI QHNKRFIRQC RNKNRVPSAV EQSTSVFDKE IMMQDKAAYN 240 KPLPYDPSLG SVHNESLVHE TSQIKMFDGS DFYESTPKYT NNIQQENSDM WKNVLQSTSF 300 GNHTICTDDD LQQQQQQCDF TITDPGFGDD VFDFSSKLLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 108 | 166 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-20 | 108 | 166 | 4 | 63 | ATERF1 |
3gcc_A | 2e-20 | 108 | 166 | 4 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060096.1 | 0.0 | uncharacterized protein LOC107005968 | ||||
TrEMBL | M1B8H7 | 0.0 | M1B8H7_SOLTU; Uncharacterized protein | ||||
STRING | Solyc12g013660.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G36060.1 | 7e-32 | ERF family protein |