PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen12g006560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 334aa MW: 37648.5 Da PI: 6.5078 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102 | 3.4e-32 | 190 | 247 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fpr+YY+Ct+++C+vkk+vers ed ++v++tYeg+Hnh+ Sopen12g006560.1 190 EDGYRWRKYGQKAVKNSPFPRNYYKCTTQKCNVKKRVERSYEDSSIVITTYEGQHNHH 247 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.6E-34 | 174 | 249 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-28 | 181 | 249 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.307 | 184 | 249 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-37 | 189 | 248 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-25 | 190 | 247 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence Send to blast |
MSDNPFYHDY MGIGGGINNT FPFFVENPSN YNDQPITPNI QNQQFVPSSY MTLTECLHGS 60 MDYNTLSNAF GMSCSSSSEI VCPRIDNQDS TKKNSVSTIV EEPVLDSPLG DNQTSVEIPP 120 TPNSSISSTS NEVGGQEDSS KIKKHVQVKG SQEEGEDKSK KECIAKKKGE KKIKEPRFAF 180 MTKSEIDNLE DGYRWRKYGQ KAVKNSPFPR NYYKCTTQKC NVKKRVERSY EDSSIVITTY 240 EGQHNHHCPA TLRGNASFLS SSHFMPNIPP QLFSQMLNIP PNNQNLLITS STYNNNNNNY 300 YYQQQQQHQG SEYTLFGGGT NNDDASWVQK QEPS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-25 | 182 | 250 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-25 | 182 | 250 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060707.1 | 0.0 | WRKY transcription factor 71-like | ||||
TrEMBL | M1AD03 | 0.0 | M1AD03_SOLTU; Uncharacterized protein | ||||
STRING | Solyc12g011200.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18170.1 | 7e-45 | WRKY DNA-binding protein 28 |