PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen12g005590.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 157aa MW: 18181 Da PI: 8.9418 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.9 | 5.6e-06 | 9 | 59 | 2 | 32 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C..................... CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.as...................k 32 r ++ +E+ RR++++ f+ L +llP+ +s k Sopen12g005590.2 9 RLEKKYVEKHRRNNMKILFNHLYSLLPPhPSqlqeamglpgqidasitciK 59 5667889*********************66566666666666666555553 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.019 | 7 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-7 | 7 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-8 | 10 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MYSSYSASRL EKKYVEKHRR NNMKILFNHL YSLLPPHPSQ LQEAMGLPGQ IDASITCIKN 60 LEIKLEKSKM QLEKLRTKKR LLNEEGFEVI DSSFSLHGNS KMQIFHETKV IGNSTMVYRK 120 VKELLNGSSS SDDIIETLLN SWDNQIYSEM LELINLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 5e-77 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769070.1 | 1e-112 | transcription factor bHLH162-like isoform X3 | ||||
TrEMBL | A0A1U8ED51 | 7e-60 | A0A1U8ED51_CAPAN; uncharacterized protein LOC107841915 | ||||
STRING | PGSC0003DMT400020215 | 1e-45 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5297 | 14 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 8e-09 | bHLH family protein |