PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen12g005590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 155aa MW: 17939.7 Da PI: 8.9418 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18 | 5e-06 | 9 | 57 | 2 | 32 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C................... CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.as.................k 32 r ++ +E+ RR++++ f+ L +llP+ +s k Sopen12g005590.1 9 RLEKKYVEKHRRNNMKILFNHLYSLLPPhPSqeamglpgqidasitciK 57 5667889*********************665666666655555555553 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.58E-9 | 7 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.134 | 7 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-8 | 9 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 155 aa Download sequence Send to blast |
MYSSYSASRL EKKYVEKHRR NNMKILFNHL YSLLPPHPSQ EAMGLPGQID ASITCIKNLE 60 IKLEKSKMQL EKLRTKKRLL NEEGFEVIDS SFSLHGNSKM QIFHETKVIG NSTMVYRKVK 120 ELLNGSSSSD DIIETLLNSW DNQIYSEMLE LINLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 5e-77 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769071.1 | 1e-110 | transcription factor bHLH162-like isoform X4 | ||||
TrEMBL | A0A1U8ED51 | 1e-56 | A0A1U8ED51_CAPAN; uncharacterized protein LOC107841915 | ||||
STRING | PGSC0003DMT400020215 | 1e-45 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-10 | bHLH family protein |