PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g005430.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 339aa    MW: 39140.1 Da    PI: 6.02
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g005430.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.16e-082773102154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp++e++++L k +gL+ +qV +WF N+R +
  Sopen12g005430.1 277 KWPYPTEEDKAKLVKDTGLQLKQVNNWFINQRKR 310
                       569*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.0E-1463107IPR005540KNOX1
PfamPF037902.4E-1565106IPR005540KNOX1
SMARTSM012564.6E-23116172IPR005541KNOX2
PfamPF037912.5E-17123171IPR005541KNOX2
PROSITE profilePS512139.394231251IPR005539ELK domain
PROSITE profilePS5007111.58251314IPR001356Homeobox domain
SMARTSM003891.9E-10253318IPR001356Homeobox domain
SuperFamilySSF466891.92E-15253316IPR009057Homeodomain-like
CDDcd000862.31E-10254314No hitNo description
Gene3DG3DSA:1.10.10.604.4E-25258314IPR009057Homeodomain-like
PfamPF059201.7E-17271310IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEFHDHFSQE LGQQQHQQHN VGDDVSDQSM NFSVKLSQQY RDEVNNNEHN NNNNNSNVWD  60
QSEKYKADIL NHHLSEQLLS AHVACLRIAT PVDQLPRIDE QLTESQNLVA KYYVVGQSQR  120
SLDDKELDQF MANYVLLLSS FKEQLQQHVR VHAMEAVMAC WDLDQSLQTL TGVASGEGTG  180
ATMSDDDEDN QVESETYCHY NGILDGQDSN GFGPLVPTEN ERFLMERVRQ ELKQEFKQDY  240
KGKIVDIREE ILRKRRAGKL PGDTTSALKA WWKSHSKWPY PTEEDKAKLV KDTGLQLKQV  300
NNWFINQRKR NWHSTPSSSS TQKSKRKSAG EKSRNDHFT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059991.10.0homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480001e-145KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A3Q7J4K60.0A0A3Q7J4K6_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000204070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-138KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]