PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g005040.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 385aa    MW: 39827.9 Da    PI: 6.5719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g005040.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-12195240555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y++ Lq
  Sopen12g005040.1 195 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVRFLQ 240
                       99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-16188250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.53E-13188244No hitNo description
PROSITE profilePS5088817.193190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16192249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-9195240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MQAMNSFQST GENGASSGEH MSHSHFDPSS SHDDFLQQIL SSVPSSSPWP EISGDGHPYN  60
FDDHQSTLLV SKLRQHQING GSSAAAAAKA LMLQQQLLLS RGIAGNGGSG MNGDQNDDGL  120
NSGNDISVQA LYNGFAGSLG QTSNQSQHFH HSQSFGAPAA SLTMNQTPAA SGSAGGAQPK  180
QQKVRARRGQ ATDPHSIAER LRRERIAERM KSLQELVPNA NKTDKASMLD EIIDYVRFLQ  240
LQVKVLSMSR LGGAAAVAPL VADRSSEGGG DCAQGNGGRG GSNGTTSSAN NDSSMTMTEH  300
QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTSTCHS MKPNNPLLLA GGSAINGVGE  360
TGGGPSSPTL SASTVQSATM GNGGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199204RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060692.10.0transcription factor bHLH66
SwissprotQ9ZUG93e-90BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A3Q7J4B10.0A0A3Q7J4B1_SOLLC; Uncharacterized protein
STRINGSolyc12g010170.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-61LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]