PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g003260.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 232aa    MW: 26396.4 Da    PI: 10.5455
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g003260.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-13125214181
                       EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                       f+k+lt+sdv+ + gr+ l+++++++         +++ ++++ ++  d+ g+  ++k++ +++ ++y+l + Wk+Fv+++gLk+ D v+
  Sopen12g003260.1 125 FVKQLTNSDVNGHqGRFLLSNEYVRNQllpllnekSEDLTTGISVKTFDPMGKYCNMKFKTWGNHKTYLLLGSWKQFVQEHGLKVSDCVT 214
                       99********9987999*******888***9987633334777888899***999999999**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.24E-14125228No hitNo description
PfamPF023628.5E-10125214IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-18125225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-18125221IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0069125230IPR003340B3 DNA binding domain
PROSITE profilePS508639.643126232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVKLEKEDIE AALLLSWLKY VPVFPKKEEK SKRKHRRFIK NETPEIQIPK RVKNSPSASG  60
FEVYGAGNPK RVRLSSNFNG ASSSRNSNPV PKRGRVSPSN LPGSLPKFPP IENLTTLIGQ  120
CSNPFVKQLT NSDVNGHQGR FLLSNEYVRN QLLPLLNEKS EDLTTGISVK TFDPMGKYCN  180
MKFKTWGNHK TYLLLGSWKQ FVQEHGLKVS DCVTGWMFRH NRTGELCFAL TW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060686.11e-172uncharacterized protein LOC107006684
TrEMBLA0A3Q7J2E91e-168A0A3Q7J2E9_SOLLC; Uncharacterized protein
STRINGSolyc12g007300.1.11e-168(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64301214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-27B3 family protein